STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CJA_1428Transposase; Identified by match to protein family HMM PF01527; match to protein family HMM TIGR01199. (99 aa)    
Predicted Functional Partners:
CJA_1427
Transposase; Identified by match to protein family HMM PF00665.
 
  
 0.859
CJA_1429
Identified by match to protein family HMM TIGR01777.
       0.520
CJA_1426
Putative sigma 54 modulation protein.
       0.439
CJA_1778
DNA internalization-related competence protein ComEC/Rec2; Identified by match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM PF03929; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361.
   
  
 0.406
CJA_0335
IS3 family transposase, orfB; Identified by match to protein family HMM PF00665.
 
  
 0.405
Your Current Organism:
Cellvibrio japonicus
NCBI taxonomy Id: 498211
Other names: C. japonicus Ueda107, Cellvibrio japonicus Ueda107, Cellvibrio japonicus str. Ueda107, Cellvibrio japonicus strain Ueda107
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.