STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amy13BAlpha amylase, putative, amy13B; Identified by similarity to OMNI:NTL02VV2128; match to protein family HMM PF00128. (605 aa)    
Predicted Functional Partners:
mal77Q
4-alpha-glucanotransferase, putative, mal77; Identified by match to protein family HMM PF02446; match to protein family HMM TIGR00217.
 
 
 0.991
glu13A
Oligo-1,6-glucosidase, putative, glu13A; Identified by match to protein family HMM PF00128.
  
  
 
0.930
adg97B
Alpha-glucosidase, putative, adg97B.
 
  
 0.916
pbg4A
6-phospho-beta-glucosidase, putative, pbg4A.
  
  
 0.912
glc13A
Alpha glucosidase, putative, glc13A; Identified by match to protein family HMM PF00128.
  
  
 
0.911
gla15
Glucan 1,4-alpha-glucosidase, putative, gla15A; Identified by similarity to GB:AAN55493.1; match to protein family HMM PF00723; match to protein family HMM TIGR01535.
    
 0.902
CJA_1272
Probable NAGC-like transcription regulator yajF; Similar to yajF Escherichia coli (strain O157:H7, substrain EDL933); identified by match to protein family HMM PF00480.
    
 0.902
agd97A
Alpha-glucosidase, putative, adg97A.
    
 0.901
aga27A
Putative alpha-galactosidase, aga27A; Hydrolyzes galactomannan found in plant cell wall, by cleaving alpha-1,6-D-galactose side-chains from the mannan backbone. Appears to act in synergy with mannanase (ManA) to elicit hydrolysis of galactomannan. Has greater activity against galactomannans with decreased degree of polymerisation values. To a lesser extent, is also able to degrade other galactosides containing alpha-1,6-linked D- galactose, such as melibiose and stachyose.
     
  0.900
pul13A
Pullulanase, putative, pul13A; Identified by match to protein family HMM PF00128; match to protein family HMM PF02922; Belongs to the glycosyl hydrolase 13 family.
  
 0.811
Your Current Organism:
Cellvibrio japonicus
NCBI taxonomy Id: 498211
Other names: C. japonicus Ueda107, Cellvibrio japonicus Ueda107, Cellvibrio japonicus str. Ueda107, Cellvibrio japonicus strain Ueda107
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.