Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
CJA_1543 | CJA_1544 | Conserved hypothetical protein. | Dienelactone hydrolase domain protein. | 0.817 |
CJA_1543 | CJA_1545 | Conserved hypothetical protein. | Putative HTH-type transcriptional regulator YcjZ; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family. | 0.486 |
CJA_1543 | CJA_3002 | Conserved hypothetical protein. | Oxidoreductase, zinc-binding dehydrogenase family; Identified by match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF02801. | 0.490 |
CJA_1544 | CJA_1543 | Dienelactone hydrolase domain protein. | Conserved hypothetical protein. | 0.817 |
CJA_1544 | CJA_1545 | Dienelactone hydrolase domain protein. | Putative HTH-type transcriptional regulator YcjZ; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family. | 0.700 |
CJA_1544 | CJA_3002 | Dienelactone hydrolase domain protein. | Oxidoreductase, zinc-binding dehydrogenase family; Identified by match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF02801. | 0.443 |
CJA_1545 | CJA_1543 | Putative HTH-type transcriptional regulator YcjZ; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family. | Conserved hypothetical protein. | 0.486 |
CJA_1545 | CJA_1544 | Putative HTH-type transcriptional regulator YcjZ; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family. | Dienelactone hydrolase domain protein. | 0.700 |
CJA_3002 | CJA_1543 | Oxidoreductase, zinc-binding dehydrogenase family; Identified by match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF02801. | Conserved hypothetical protein. | 0.490 |
CJA_3002 | CJA_1544 | Oxidoreductase, zinc-binding dehydrogenase family; Identified by match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF02801. | Dienelactone hydrolase domain protein. | 0.443 |