Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CJA_1663Identified by match to protein family HMM PF02635; match to protein family HMM TIGR03010; Belongs to the DsrF/TusC family. (121 aa)    
Predicted Functional Partners:
dsrH
DsrH; Identified by match to protein family HMM PF04077; match to protein family HMM TIGR03011.
 
 0.999
dsrE
dsrE protein; Identified by match to protein family HMM PF02635; match to protein family HMM TIGR03012.
 
 0.999
CJA_1661
DsrC; Part of a sulfur-relay system.
 
  
 0.976
CJA_1665
Integral membrane protein; Identified by match to protein family HMM PF01027; Belongs to the BI1 family.
  
    0.680
rdgC
Recombinaison associated protein; May be involved in recombination; Belongs to the RdgC family.
  
     0.523
CJA_1672
Predicted metal-binding/nucleic acid-binding protein; Identified by match to protein family HMM PF02620.
  
     0.517
CJA_2815
Putative rod shape-determining protein MreD; Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins. Belongs to the MreD family.
  
     0.499
CJA_1333
Identified by match to protein family HMM PF01206; Belongs to the sulfur carrier protein TusA family.
 
   
 0.443
bpt
arginine-tRNA-protein transferase-related protein; Functions in the N-end rule pathway of protein degradation where it conjugates Leu from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate. Belongs to the R-transferase family. Bpt subfamily.
  
    0.437
CJA_2379
SirA protein homolog; Identified by match to protein family HMM PF01206; Belongs to the sulfur carrier protein TusA family.
 
   
 0.422
Your Current Organism:
Cellvibrio japonicus
NCBI taxonomy Id: 498211
Other names: C. japonicus Ueda107, Cellvibrio japonicus Ueda107, Cellvibrio japonicus str. Ueda107, Cellvibrio japonicus strain Ueda107
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