STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
abfXabfX GGDEF domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254. (297 aa)    
Predicted Functional Partners:
CJA_1189
Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00563.
  
 0.967
CJA_1897
Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF01966.
 
  
 0.938
CJA_2939
Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00563.
  
 0.934
pilH
Twitching motility protein PilH; Identified by match to protein family HMM PF00072.
 
 
  
 0.900
CJA_0953
Two-component transcriptional regulator, LuxR family; Identified by match to protein family HMM PF00072; match to protein family HMM PF00196.
 
 
  
 0.900
phoB
Phosphate regulon transcriptional regulatory protein PhoB; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486; match to protein family HMM TIGR02154.
 
 
  
 0.778
CJA_3085
Putative sensory box protein; Identified by match to protein family HMM PF00497; match to protein family HMM PF00563; match to protein family HMM PF00990.
  
 0.766
CJA_2957
EAL domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254.
  
    0.703
CJA_1808
EAL domain/GGDEF domain protein; Identified by match to protein family HMM PF00563; match to protein family HMM PF00571; match to protein family HMM PF00990; match to protein family HMM TIGR00254.
    0.681
CJA_2573
HD domain protein; Identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277.
 
 
 
 0.643
Your Current Organism:
Cellvibrio japonicus
NCBI taxonomy Id: 498211
Other names: C. japonicus Ueda107, Cellvibrio japonicus Ueda107, Cellvibrio japonicus str. Ueda107, Cellvibrio japonicus strain Ueda107
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.