STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
psbSPsbS; Identified by match to protein family HMM PF04542; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily. (206 aa)    
Predicted Functional Partners:
CJA_1861
Probable transmembrane sensor; Identified by match to protein family HMM PF04773.
 
 
 0.834
fecR
Transmembrane sensor; Identified by match to protein family HMM PF04773; match to protein family HMM TIGR01409.
 
 
 0.833
CJA_2296
Transmembrane sensor; Identified by match to protein family HMM PF04773.
 
 
 0.828
CJA_2680
Sigma factor regulatory protein, FecR/PupR family; Identified by match to protein family HMM PF04773.
 
 
 0.828
CJA_2294
RNA polymerase sigma factor, sigma-70 family; Identified by match to protein family HMM PF04542; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.774
mucA
mucA; Identified by match to protein family HMM PF03872.
  
 
 0.753
CJA_1878
AMP-binding enzyme domain protein; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733.
 
  
 0.603
CJA_1870
Amino acid adenylation domain protein; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00975; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733.
  
  
 0.576
CJA_1879
Hypothetical protein; Identified by Glimmer3; putative.
       0.572
CJA_2295
TonB-dependent receptor protein; Identified by match to protein family HMM PF00593; match to protein family HMM TIGR01783.
  
  
 0.540
Your Current Organism:
Cellvibrio japonicus
NCBI taxonomy Id: 498211
Other names: C. japonicus Ueda107, Cellvibrio japonicus Ueda107, Cellvibrio japonicus str. Ueda107, Cellvibrio japonicus strain Ueda107
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.