Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CJA_2090 | gabD | CJA_2090 | CJA_2087 | Family of unknown function (DUF589) superfamily; Identified by match to protein family HMM PF04543. | Succinate-semialdehyde dehydrogenase; Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family. | 0.459 |
CJA_2090 | nhaP2 | CJA_2090 | CJA_2088 | Family of unknown function (DUF589) superfamily; Identified by match to protein family HMM PF04543. | Cell volume regulation protein A homolog; K(+)/H(+) antiporter that extrudes potassium in exchange for external protons and maintains the internal concentration of potassium under toxic levels; Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family. NhaP2 subfamily. | 0.459 |
CJA_2090 | rnb | CJA_2090 | CJA_2089 | Family of unknown function (DUF589) superfamily; Identified by match to protein family HMM PF04543. | Exoribonuclease II; Identified by match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM TIGR00358; Belongs to the RNR ribonuclease family. | 0.693 |
gabD | CJA_2090 | CJA_2087 | CJA_2090 | Succinate-semialdehyde dehydrogenase; Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family. | Family of unknown function (DUF589) superfamily; Identified by match to protein family HMM PF04543. | 0.459 |
gabD | nhaP2 | CJA_2087 | CJA_2088 | Succinate-semialdehyde dehydrogenase; Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family. | Cell volume regulation protein A homolog; K(+)/H(+) antiporter that extrudes potassium in exchange for external protons and maintains the internal concentration of potassium under toxic levels; Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family. NhaP2 subfamily. | 0.773 |
gabD | rnb | CJA_2087 | CJA_2089 | Succinate-semialdehyde dehydrogenase; Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family. | Exoribonuclease II; Identified by match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM TIGR00358; Belongs to the RNR ribonuclease family. | 0.512 |
nhaP2 | CJA_2090 | CJA_2088 | CJA_2090 | Cell volume regulation protein A homolog; K(+)/H(+) antiporter that extrudes potassium in exchange for external protons and maintains the internal concentration of potassium under toxic levels; Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family. NhaP2 subfamily. | Family of unknown function (DUF589) superfamily; Identified by match to protein family HMM PF04543. | 0.459 |
nhaP2 | gabD | CJA_2088 | CJA_2087 | Cell volume regulation protein A homolog; K(+)/H(+) antiporter that extrudes potassium in exchange for external protons and maintains the internal concentration of potassium under toxic levels; Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family. NhaP2 subfamily. | Succinate-semialdehyde dehydrogenase; Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family. | 0.773 |
nhaP2 | rnb | CJA_2088 | CJA_2089 | Cell volume regulation protein A homolog; K(+)/H(+) antiporter that extrudes potassium in exchange for external protons and maintains the internal concentration of potassium under toxic levels; Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family. NhaP2 subfamily. | Exoribonuclease II; Identified by match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM TIGR00358; Belongs to the RNR ribonuclease family. | 0.506 |
rnb | CJA_2090 | CJA_2089 | CJA_2090 | Exoribonuclease II; Identified by match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM TIGR00358; Belongs to the RNR ribonuclease family. | Family of unknown function (DUF589) superfamily; Identified by match to protein family HMM PF04543. | 0.693 |
rnb | gabD | CJA_2089 | CJA_2087 | Exoribonuclease II; Identified by match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM TIGR00358; Belongs to the RNR ribonuclease family. | Succinate-semialdehyde dehydrogenase; Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family. | 0.512 |
rnb | nhaP2 | CJA_2089 | CJA_2088 | Exoribonuclease II; Identified by match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM TIGR00358; Belongs to the RNR ribonuclease family. | Cell volume regulation protein A homolog; K(+)/H(+) antiporter that extrudes potassium in exchange for external protons and maintains the internal concentration of potassium under toxic levels; Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family. NhaP2 subfamily. | 0.506 |