STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mshLMSHA biogenesis protein MshL; Identified by match to protein family HMM PF00263. (578 aa)    
Predicted Functional Partners:
CJA_2399
Putative MSHA biogenesis protein MshJ.
 
  
 0.950
CJA_2401
Putative MSHA biogenesis protein MshI.
 
  
 0.950
mshE
MSHA biogenesis protein MshE; Identified by match to protein family HMM PF00437; match to protein family HMM PF05157.
 
  
 0.885
mshM
MSHA biogenesis protein MshM.
 
  
 0.872
gspC
General secretion pathway protein C; Identified by match to protein family HMM TIGR01713.
 
 
 0.872
mshG
MSHA biogenesis protein MshG; Identified by match to protein family HMM PF00482.
 
  
 0.849
CJA_2395
Putative MSHA biogenesis protein MshN; Identified by match to protein family HMM PF00515.
 
  
 0.844
CJA_2390
Hypothetical protein; Identified by Glimmer3; putative.
 
  
 0.805
CJA_2387
Conserved hypothetical protein.
 
  
 0.803
mshD
MSHA pilin protein MshD.
 
  
 0.803
Your Current Organism:
Cellvibrio japonicus
NCBI taxonomy Id: 498211
Other names: C. japonicus Ueda107, Cellvibrio japonicus Ueda107, Cellvibrio japonicus str. Ueda107, Cellvibrio japonicus strain Ueda107
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.