STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xyn10AEndo-1,4-beta-xylanase, xyn10A; Identified by match to protein family HMM PF00331; match to protein family HMM PF00553; match to protein family HMM PF02013; Belongs to the glycosyl hydrolase 10 (cellulase F) family. (611 aa)    
Predicted Functional Partners:
cel9B
Endo-1,4-beta glucanase, putative, cel9B; Identified by match to protein family HMM PF00759; match to protein family HMM PF02927.
 
   
 0.895
aga27A
Putative alpha-galactosidase, aga27A; Hydrolyzes galactomannan found in plant cell wall, by cleaving alpha-1,6-D-galactose side-chains from the mannan backbone. Appears to act in synergy with mannanase (ManA) to elicit hydrolysis of galactomannan. Has greater activity against galactomannans with decreased degree of polymerisation values. To a lesser extent, is also able to degrade other galactosides containing alpha-1,6-linked D- galactose, such as melibiose and stachyose.
 
  
 0.803
pel3A
Pectate lyase, putative, pel3A; Identified by match to protein family HMM PF03211.
 
 
 0.793
xyn11B
Endo-1,4-beta-xylanase, xyn11B; Identified by match to protein family HMM PF00457; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
   
 0.786
CJA_3068
Conserved hypothetical protein.
 
 
 0.774
CJA_2470
Hypothetical protein; Identified by Glimmer3; putative.
       0.773
gla67A
Alpha-glucuronidase, gla67A; Alpha-glucuronidase involved in the hydrolysis of xylan, a major structural heterogeneous polysaccharide found in plant biomass representing the second most abundant polysaccharide in the biosphere, after cellulose. It catalyzes the cleavage of the alpha-1,2-glycosidic bond at the non-reducing end of 4-O-methyl-D-glucuronic acid (4-O- MeGlcA) side chain of short xylooligosaccharides and releases 4-O- methylglucuronic acid. It can also hydrolyze small soluble oligosaccharides such as dobiouronic acid, aldotriouronic acid, aldotetraouronic acid, and aldopenta [...]
 
   
 0.772
xylE
MFS transporter; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00879; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.
      
 0.771
pel1B
Pectate lyase, putative, pel1B; Identified by match to protein family HMM PF00544; match to protein family HMM PF03422.
  
   
 0.761
CJA_0832
Cip2.
 
     0.756
Your Current Organism:
Cellvibrio japonicus
NCBI taxonomy Id: 498211
Other names: C. japonicus Ueda107, Cellvibrio japonicus Ueda107, Cellvibrio japonicus str. Ueda107, Cellvibrio japonicus strain Ueda107
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.