STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CJA_2573HD domain protein; Identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277. (418 aa)    
Predicted Functional Partners:
adrA
Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254.
 
 
 0.929
CJA_1657
Conserved domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254.
 
 
 0.928
CJA_2061
Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254.
 
 
 0.891
abfX
abfX GGDEF domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254.
 
 
 
 0.643
CJA_0187
Putative GGDEF domain protein; Identified by match to protein family HMM PF00672; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254.
 
 
 0.571
CJA_1985
Identified by match to protein family HMM PF00563; match to protein family HMM PF00785; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254.
   
 0.565
CJA_3623
Sensory box protein; Identified by match to protein family HMM PF00785; match to protein family HMM PF00990; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254.
 
 
 0.496
CJA_2574
Identified by match to protein family HMM PF03819; match to protein family HMM TIGR00444.
       0.492
CJA_2575
GTP pyrophosphokinase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
       0.492
CJA_0326
Diguanylate cyclase (GGDEF) domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM TIGR00254.
 
 
 0.480
Your Current Organism:
Cellvibrio japonicus
NCBI taxonomy Id: 498211
Other names: C. japonicus Ueda107, Cellvibrio japonicus Ueda107, Cellvibrio japonicus str. Ueda107, Cellvibrio japonicus strain Ueda107
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.