Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CJA_1638 | era | CJA_1638 | CJA_2580 | Identified by match to protein family HMM PF02562. | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.484 |
| CJA_1638 | recO | CJA_1638 | CJA_2578 | Identified by match to protein family HMM PF02562. | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.714 |
| CJA_2582 | era | CJA_2582 | CJA_2580 | Conserved hypothetical protein. | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.728 |
| CJA_2582 | recO | CJA_2582 | CJA_2578 | Conserved hypothetical protein. | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.719 |
| CJA_2582 | rnc | CJA_2582 | CJA_2581 | Conserved hypothetical protein. | Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 0.819 |
| era | CJA_1638 | CJA_2580 | CJA_1638 | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | Identified by match to protein family HMM PF02562. | 0.484 |
| era | CJA_2582 | CJA_2580 | CJA_2582 | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | Conserved hypothetical protein. | 0.728 |
| era | pdxJ | CJA_2580 | CJA_1791 | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | Pyridoxal phosphate biosynthesis protein PdxJ; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate. | 0.716 |
| era | phoH | CJA_2580 | CJA_1389 | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | Identified by match to protein family HMM PF02562. | 0.470 |
| era | recO | CJA_2580 | CJA_2578 | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.963 |
| era | rnc | CJA_2580 | CJA_2581 | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 0.987 |
| ftsB | recO | CJA_2224 | CJA_2578 | Septum formation initiator superfamily; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.734 |
| ftsB | sspB | CJA_2224 | CJA_2783 | Septum formation initiator superfamily; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. | Identified by match to protein family HMM PF04386. | 0.754 |
| pdxJ | era | CJA_1791 | CJA_2580 | Pyridoxal phosphate biosynthesis protein PdxJ; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate. | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.716 |
| pdxJ | recO | CJA_1791 | CJA_2578 | Pyridoxal phosphate biosynthesis protein PdxJ; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate. | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.690 |
| phoH | era | CJA_1389 | CJA_2580 | Identified by match to protein family HMM PF02562. | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.470 |
| phoH | recO | CJA_1389 | CJA_2578 | Identified by match to protein family HMM PF02562. | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.714 |
| recO | CJA_1638 | CJA_2578 | CJA_1638 | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | Identified by match to protein family HMM PF02562. | 0.714 |
| recO | CJA_2582 | CJA_2578 | CJA_2582 | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | Conserved hypothetical protein. | 0.719 |
| recO | era | CJA_2578 | CJA_2580 | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.963 |
page 1 of 2