STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pilAFimbrial protein precursor (Pilin); Identified by match to protein family HMM PF00114. (161 aa)    
Predicted Functional Partners:
CJA_2729
Pilin; Identified by match to protein family HMM PF00114; Belongs to the N-Me-Phe pilin family.
 
  
 
0.951
CJA_1892
Similar to Neisseria gonorrhoeae P(-)rp(+) fimbrial protein; Belongs to the N-Me-Phe pilin family.
  
  
  0.928
tfpZ
Type IV pilin accessory protein; Found in Group V pilins in P. aeruginosa.
       0.697
pilN
Type 4 fimbrial biogenesis protein PilN; Identified by match to protein family HMM PF05137.
 
  
 0.644
pilM
Type IV pilus assembly protein PilM; Identified by match to protein family HMM TIGR01175.
 
   
 0.638
pilO
pilO; Identified by match to protein family HMM PF04350.
 
  
 0.631
pilC
Type IV pilus biogenesis protein PilC; Identified by match to protein family HMM PF00482.
 
  
 0.616
CJA_0416
Fimbrial assembly protein PilQ; Identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM PF07660.
 
   
 0.606
CJA_1778
DNA internalization-related competence protein ComEC/Rec2; Identified by match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM PF03929; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361.
 
  
 0.585
pilD
Type IV pilus prepilin peptidase PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.530
Your Current Organism:
Cellvibrio japonicus
NCBI taxonomy Id: 498211
Other names: C. japonicus Ueda107, Cellvibrio japonicus Ueda107, Cellvibrio japonicus str. Ueda107, Cellvibrio japonicus strain Ueda107
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.