STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xyn10CEndo-beta-1,4-xylanase, xyn10C; Identified by match to protein family HMM PF00331. (606 aa)    
Predicted Functional Partners:
CJA_3068
Conserved hypothetical protein.
     0.913
gly43J
beta-xylosidase/alpha-L-arabinfuranosidase, putative, gly43J; Identified by match to protein family HMM PF04616; Belongs to the glycosyl hydrolase 43 family.
   
 0.884
xyn11A
Endo-1,4-beta-xylanase, esterase, xyn11A; Identified by similarity to PIR:S59633; match to protein family HMM PF00457; match to protein family HMM PF01522; match to protein family HMM PF02013; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
 
   
 0.877
abf62A
alpha-L-arabinofuranosidase, abf62A; Xylanase C contributes to hydrolyse hemicellulose, the major component of plant cell-walls.
     0.852
gly43G
beta-xylosidase/alpha-L-arabinfuranosidase, putative, gly43G; Identified by match to protein family HMM PF04616; Belongs to the glycosyl hydrolase 43 family.
   
 0.831
xyn11B
Endo-1,4-beta-xylanase, xyn11B; Identified by match to protein family HMM PF00457; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
 
   
 0.768
CJA_0831
Cellulose or protein binding domain; Identified by match to protein family HMM PF02013.
 
     0.757
CJA_0832
Cip2.
 
     0.757
gly74A
Endo-1,4-beta-glucanase/xyloglucanase, putative, gly74A; Identified by match to protein family HMM PF00553; match to protein family HMM PF02012; match to protein family HMM PF02013.
  
   
 0.757
pel1B
Pectate lyase, putative, pel1B; Identified by match to protein family HMM PF00544; match to protein family HMM PF03422.
  
   
 0.752
Your Current Organism:
Cellvibrio japonicus
NCBI taxonomy Id: 498211
Other names: C. japonicus Ueda107, Cellvibrio japonicus Ueda107, Cellvibrio japonicus str. Ueda107, Cellvibrio japonicus strain Ueda107
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.