Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
pilSSensor kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00904; match to protein family HMM PF02518. (556 aa)    
Predicted Functional Partners:
pilR
PilR; Identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199.
 
 
 0.988
rpoN
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
     
 0.909
pilM
Type IV pilus assembly protein PilM; Identified by match to protein family HMM TIGR01175.
  
   
 0.832
pilL
Type IV pili sensor histidine kinase/response regulator PilL; Identified by match to protein family HMM PF00072; match to protein family HMM PF01584; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM PF02895.
 
 
 0.818
pilZ
Type 4 fimbrial biogenesis protein PilZ; Identified by match to protein family HMM PF07238.
  
  
 0.806
pilP
Type IV pilus biogenesis protein PilP; Identified by match to protein family HMM PF04351.
  
   
 0.799
pilG
Twitching motility protein PilG - Pseudomonas aeruginosa; Identified by match to protein family HMM PF00072.
  
 
 0.798
pilN
Type 4 fimbrial biogenesis protein PilN; Identified by match to protein family HMM PF05137.
  
   
 0.787
pilH
Twitching motility protein PilH; Identified by match to protein family HMM PF00072.
  
 
 0.780
CJA_1748
Conserved hypothetical protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF01476.
  
  
 0.765
Your Current Organism:
Cellvibrio japonicus
NCBI taxonomy Id: 498211
Other names: C. japonicus Ueda107, Cellvibrio japonicus Ueda107, Cellvibrio japonicus str. Ueda107, Cellvibrio japonicus strain Ueda107
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