STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xyn10BEndo-1,4-beta-xylanase, xyn10B; Xylanase B contributes to hydrolyze hemicellulose, the major component of plant cell-walls. (599 aa)    
Predicted Functional Partners:
xyn11B
Endo-1,4-beta-xylanase, xyn11B; Identified by match to protein family HMM PF00457; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
 
   
 0.919
abf62A
alpha-L-arabinofuranosidase, abf62A; Xylanase C contributes to hydrolyse hemicellulose, the major component of plant cell-walls.
 
 
 
0.907
fee1B
Ferruloyl esterase, putative, fee1B; Identified by similarity to PIR:S36781; match to protein family HMM PF00553; match to protein family HMM PF03422; match to protein family HMM PF03664.
 
 
  
0.867
fee1A
Ferruloyl esterase, fee1A; Identified by match to protein family HMM PF00553; match to protein family HMM PF03422; match to protein family HMM PF03664.
 
 
  
0.831
CJA_3068
Conserved hypothetical protein.
     0.780
CJA_0831
Cellulose or protein binding domain; Identified by match to protein family HMM PF02013.
 
     0.769
cel9B
Endo-1,4-beta glucanase, putative, cel9B; Identified by match to protein family HMM PF00759; match to protein family HMM PF02927.
 
   
 0.750
CJA_0832
Cip2.
 
     0.746
pelC
Pectate lyase III; Identified by match to protein family HMM PF00544; match to protein family HMM TIGR01451.
 
   
 0.736
gla67A
Alpha-glucuronidase, gla67A; Alpha-glucuronidase involved in the hydrolysis of xylan, a major structural heterogeneous polysaccharide found in plant biomass representing the second most abundant polysaccharide in the biosphere, after cellulose. It catalyzes the cleavage of the alpha-1,2-glycosidic bond at the non-reducing end of 4-O-methyl-D-glucuronic acid (4-O- MeGlcA) side chain of short xylooligosaccharides and releases 4-O- methylglucuronic acid. It can also hydrolyze small soluble oligosaccharides such as dobiouronic acid, aldotriouronic acid, aldotetraouronic acid, and aldopenta [...]
 
   
 0.725
Your Current Organism:
Cellvibrio japonicus
NCBI taxonomy Id: 498211
Other names: C. japonicus Ueda107, Cellvibrio japonicus Ueda107, Cellvibrio japonicus str. Ueda107, Cellvibrio japonicus strain Ueda107
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