abf62A protein (Cellvibrio japonicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

abf62A

alpha-L-arabinofuranosidase, abf62A; Xylanase C contributes to hydrolyse hemicellulose, the major component of plant cell-walls. (619 aa)

Predicted Functional Partners:

xyn10D

0.962

xyn11B

0.913

CJA_1870

0.908

xyn10B

0.907

fee1B

0.897

man5C

0.876

xyn10C

0.852

gly43N

0.833

fee1A

0.833

pel3A

0.774

Your Current Organism:

Cellvibrio japonicus

NCBI taxonomy Id: 498211
Other names: C. japonicus Ueda107, Cellvibrio japonicus Ueda107, Cellvibrio japonicus str. Ueda107, Cellvibrio japonicus strain Ueda107

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CJA_1870	abf62A	CJA_1870	CJA_3281	Amino acid adenylation domain protein; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00975; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733.	alpha-L-arabinofuranosidase, abf62A; Xylanase C contributes to hydrolyse hemicellulose, the major component of plant cell-walls.	0.908
abf62A	CJA_1870	CJA_3281	CJA_1870	alpha-L-arabinofuranosidase, abf62A; Xylanase C contributes to hydrolyse hemicellulose, the major component of plant cell-walls.	Amino acid adenylation domain protein; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00975; match to protein family HMM TIGR01720; match to protein family HMM TIGR01733.	0.908
abf62A	fee1A	CJA_3281	CJA_3287	alpha-L-arabinofuranosidase, abf62A; Xylanase C contributes to hydrolyse hemicellulose, the major component of plant cell-walls.	Ferruloyl esterase, fee1A; Identified by match to protein family HMM PF00553; match to protein family HMM PF03422; match to protein family HMM PF03664.	0.833
abf62A	fee1B	CJA_3281	CJA_3282	alpha-L-arabinofuranosidase, abf62A; Xylanase C contributes to hydrolyse hemicellulose, the major component of plant cell-walls.	Ferruloyl esterase, putative, fee1B; Identified by similarity to PIR:S36781; match to protein family HMM PF00553; match to protein family HMM PF03422; match to protein family HMM PF03664.	0.897
abf62A	gly43N	CJA_3281	CJA_3018	alpha-L-arabinofuranosidase, abf62A; Xylanase C contributes to hydrolyse hemicellulose, the major component of plant cell-walls.	beta-xylosidase/alpha-L-arabinfuranosidase, putative, gly43N; Identified by match to protein family HMM PF04616; Belongs to the glycosyl hydrolase 43 family.	0.833
abf62A	man5C	CJA_3281	CJA_3470	alpha-L-arabinofuranosidase, abf62A; Xylanase C contributes to hydrolyse hemicellulose, the major component of plant cell-walls.	Endo-1, 4-beta mannanase, man5C; Identified by similarity to GB:AAO31761.1; match to protein family HMM PF00150; match to protein family HMM PF02013; match to protein family HMM PF02839.	0.876
abf62A	pel3A	CJA_3281	CJA_0212	alpha-L-arabinofuranosidase, abf62A; Xylanase C contributes to hydrolyse hemicellulose, the major component of plant cell-walls.	Pectate lyase, putative, pel3A; Identified by match to protein family HMM PF03211.	0.774
abf62A	xyn10B	CJA_3281	CJA_3280	alpha-L-arabinofuranosidase, abf62A; Xylanase C contributes to hydrolyse hemicellulose, the major component of plant cell-walls.	Endo-1,4-beta-xylanase, xyn10B; Xylanase B contributes to hydrolyze hemicellulose, the major component of plant cell-walls.	0.907
abf62A	xyn10C	CJA_3281	CJA_3066	alpha-L-arabinofuranosidase, abf62A; Xylanase C contributes to hydrolyse hemicellulose, the major component of plant cell-walls.	Endo-beta-1,4-xylanase, xyn10C; Identified by match to protein family HMM PF00331.	0.852
abf62A	xyn10D	CJA_3281	CJA_2888	alpha-L-arabinofuranosidase, abf62A; Xylanase C contributes to hydrolyse hemicellulose, the major component of plant cell-walls.	Endo-1,4-beta-xylanase, xyn10D; Identified by similarity to GB:AAD47087.1; match to protein family HMM PF00331; match to protein family HMM TIGR01409.	0.962
abf62A	xyn11B	CJA_3281	CJA_3762	alpha-L-arabinofuranosidase, abf62A; Xylanase C contributes to hydrolyse hemicellulose, the major component of plant cell-walls.	Endo-1,4-beta-xylanase, xyn11B; Identified by match to protein family HMM PF00457; Belongs to the glycosyl hydrolase 11 (cellulase G) family.	0.913
fee1A	abf62A	CJA_3287	CJA_3281	Ferruloyl esterase, fee1A; Identified by match to protein family HMM PF00553; match to protein family HMM PF03422; match to protein family HMM PF03664.	alpha-L-arabinofuranosidase, abf62A; Xylanase C contributes to hydrolyse hemicellulose, the major component of plant cell-walls.	0.833
fee1A	fee1B	CJA_3287	CJA_3282	Ferruloyl esterase, fee1A; Identified by match to protein family HMM PF00553; match to protein family HMM PF03422; match to protein family HMM PF03664.	Ferruloyl esterase, putative, fee1B; Identified by similarity to PIR:S36781; match to protein family HMM PF00553; match to protein family HMM PF03422; match to protein family HMM PF03664.	0.829
fee1A	gly43N	CJA_3287	CJA_3018	Ferruloyl esterase, fee1A; Identified by match to protein family HMM PF00553; match to protein family HMM PF03422; match to protein family HMM PF03664.	beta-xylosidase/alpha-L-arabinfuranosidase, putative, gly43N; Identified by match to protein family HMM PF04616; Belongs to the glycosyl hydrolase 43 family.	0.630
fee1A	man5C	CJA_3287	CJA_3470	Ferruloyl esterase, fee1A; Identified by match to protein family HMM PF00553; match to protein family HMM PF03422; match to protein family HMM PF03664.	Endo-1, 4-beta mannanase, man5C; Identified by similarity to GB:AAO31761.1; match to protein family HMM PF00150; match to protein family HMM PF02013; match to protein family HMM PF02839.	0.424
fee1A	pel3A	CJA_3287	CJA_0212	Ferruloyl esterase, fee1A; Identified by match to protein family HMM PF00553; match to protein family HMM PF03422; match to protein family HMM PF03664.	Pectate lyase, putative, pel3A; Identified by match to protein family HMM PF03211.	0.772
fee1A	xyn10B	CJA_3287	CJA_3280	Ferruloyl esterase, fee1A; Identified by match to protein family HMM PF00553; match to protein family HMM PF03422; match to protein family HMM PF03664.	Endo-1,4-beta-xylanase, xyn10B; Xylanase B contributes to hydrolyze hemicellulose, the major component of plant cell-walls.	0.831
fee1A	xyn10C	CJA_3287	CJA_3066	Ferruloyl esterase, fee1A; Identified by match to protein family HMM PF00553; match to protein family HMM PF03422; match to protein family HMM PF03664.	Endo-beta-1,4-xylanase, xyn10C; Identified by match to protein family HMM PF00331.	0.647
fee1A	xyn10D	CJA_3287	CJA_2888	Ferruloyl esterase, fee1A; Identified by match to protein family HMM PF00553; match to protein family HMM PF03422; match to protein family HMM PF03664.	Endo-1,4-beta-xylanase, xyn10D; Identified by similarity to GB:AAD47087.1; match to protein family HMM PF00331; match to protein family HMM TIGR01409.	0.421
fee1A	xyn11B	CJA_3287	CJA_3762	Ferruloyl esterase, fee1A; Identified by match to protein family HMM PF00553; match to protein family HMM PF03422; match to protein family HMM PF03664.	Endo-1,4-beta-xylanase, xyn11B; Identified by match to protein family HMM PF00457; Belongs to the glycosyl hydrolase 11 (cellulase G) family.	0.768

page 1 of 5

Server load: low (18%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2023

Credits

Access

Info

About