STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CJA_3319Hypothetical protein; Identified by Glimmer3; putative. (660 aa)    
Predicted Functional Partners:
CJA_3317
Putative TPR domain protein; Identified by match to protein family HMM PF00515.
  
 
 0.801
CJA_3316
Hypothetical protein; Identified by Glimmer3; putative.
       0.792
CJA_3320
Hypothetical protein; Identified by Glimmer3; putative.
       0.792
CJA_3318
Tetratricopeptide repeat domain protein; Identified by match to protein family HMM PF00515.
      0.790
aglR
Adventurous gliding motility protein R; Identified by match to protein family HMM PF01618.
       0.671
CJA_3313
Putative adventurous gliding motility protein S.
   
   0.580
CJA_3314
Hypothetical protein; Identified by Glimmer3; putative.
   
   0.580
CJA_3312
TonB family C-terminal domain protein; Identified by match to protein family HMM TIGR01352.
   
   0.545
htpG
Putative Hsp90 protein; Molecular chaperone. Has ATPase activity.
   
 0.540
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.500
Your Current Organism:
Cellvibrio japonicus
NCBI taxonomy Id: 498211
Other names: C. japonicus Ueda107, Cellvibrio japonicus Ueda107, Cellvibrio japonicus str. Ueda107, Cellvibrio japonicus strain Ueda107
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.