STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gspEGeneral secretion pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins. (524 aa)    
Predicted Functional Partners:
gspF
General secretion pathway protein F; Identified by match to protein family HMM PF00482; match to protein family HMM TIGR02120.
 
 0.996
gspG
General secretion pathway protein G; Identified by match to protein family HMM TIGR01710.
 
 
 0.988
gspI
General secretion pathway protein I; Identified by match to protein family HMM PF02501; match to protein family HMM TIGR01707.
 
 
 0.962
gspD
General secretion pathway protein D; Identified by match to protein family HMM PF00263; match to protein family HMM PF03958.
  
 0.958
gspJ
General secretion pathway protein J; Identified by match to protein family HMM TIGR01711.
 
   
 0.951
mshG
MSHA biogenesis protein MshG; Identified by match to protein family HMM PF00482.
 
 0.920
pilC
Type IV pilus biogenesis protein PilC; Identified by match to protein family HMM PF00482.
 
 0.919
CJA_0483
Type IV pilus biogenesis protein; Identified by match to protein family HMM PF00437; match to protein family HMM PF05157.
  
  
 
0.913
gspL
General secretion pathway protein L; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 
 0.900
gspC
General secretion pathway protein C; Identified by match to protein family HMM TIGR01713.
 
  
 0.853
Your Current Organism:
Cellvibrio japonicus
NCBI taxonomy Id: 498211
Other names: C. japonicus Ueda107, Cellvibrio japonicus Ueda107, Cellvibrio japonicus str. Ueda107, Cellvibrio japonicus strain Ueda107
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.