STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gspDGeneral secretion pathway protein D; Identified by match to protein family HMM PF00263; match to protein family HMM PF03958. (681 aa)    
Predicted Functional Partners:
gspC
General secretion pathway protein C; Identified by match to protein family HMM TIGR01713.
 
 
 0.994
gspG
General secretion pathway protein G; Identified by match to protein family HMM TIGR01710.
  
 0.972
gspF
General secretion pathway protein F; Identified by match to protein family HMM PF00482; match to protein family HMM TIGR02120.
 
  
 0.959
gspE
General secretion pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
 0.958
gspJ
General secretion pathway protein J; Identified by match to protein family HMM TIGR01711.
 
  
 0.957
gspK
General secretion pathway protein K; Identified by match to protein family HMM PF03934.
 
   
 0.953
gspI
General secretion pathway protein I; Identified by match to protein family HMM PF02501; match to protein family HMM TIGR01707.
 
  
 0.922
gspL
General secretion pathway protein L; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
  
 0.812
gspM
General secretion pathway protein M; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
  
 0.760
gspH
General secretion pathway protein H.
  
  
 0.705
Your Current Organism:
Cellvibrio japonicus
NCBI taxonomy Id: 498211
Other names: C. japonicus Ueda107, Cellvibrio japonicus Ueda107, Cellvibrio japonicus str. Ueda107, Cellvibrio japonicus strain Ueda107
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.