STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CJA_3381Conserved hypothetical protein. (220 aa)    
Predicted Functional Partners:
CJA_3380
Excitatory amino acid transporter; Identified by match to protein family HMM PF00375; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
       0.773
CJA_3379
MATE efflux family protein subfamily; Identified by match to protein family HMM PF01554; match to protein family HMM TIGR00797.
       0.668
CJA_3378
Putative membrane protein.
       0.574
CJA_1892
Similar to Neisseria gonorrhoeae P(-)rp(+) fimbrial protein; Belongs to the N-Me-Phe pilin family.
  
     0.527
gt51B
Murein polymerase, putative, gt51B; Identified by match to protein family HMM PF00905; match to protein family HMM PF00912; match to protein family HMM PF06832; match to protein family HMM TIGR02073.
       0.527
CJA_3383
hemY protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07219.
       0.527
CJA_3384
Putative uroporphyrinogen III methylase; Identified by match to protein family HMM PF04375.
       0.527
hemD
uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
       0.527
hemC
Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
       0.527
CJA_0784
Conserved hypothetical protein.
  
     0.525
Your Current Organism:
Cellvibrio japonicus
NCBI taxonomy Id: 498211
Other names: C. japonicus Ueda107, Cellvibrio japonicus Ueda107, Cellvibrio japonicus str. Ueda107, Cellvibrio japonicus strain Ueda107
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