STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prsRPutative PEP-CTERM system response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF00165; match to protein family HMM PF02954; match to protein family HMM TIGR01199; match to protein family HMM TIGR02915. (464 aa)    
Predicted Functional Partners:
prsK
Putative PEP-CTERM system histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR02916.
 
 
   0.950
rpoN
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.777
CJA_3293
Sigma-54 interaction domain protein; Identified by match to protein family HMM PF00158.
  
     0.773
CJA_0956
Amide-urea binding protein; Identified by match to protein family HMM PF01094.
 
    
 0.750
CJA_3404
Eight transmembrane protein EpsH (proposed exosortase); Identified by match to protein family HMM PF02757; match to protein family HMM TIGR02602.
  
     0.670
pda4C
Polysaccharide deacetylase, putative, pda4C; Identified by match to protein family HMM PF01522; match to protein family HMM TIGR03006.
  
     0.599
CJA_3419
TPR domain protein; Identified by match to protein family HMM PF00515.
 
 
 
 0.598
fliM
Flagellar motor switch protein FliM; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.
  
  
 0.504
CJA_3423
Polysaccharide chain length determinant protein; Identified by match to protein family HMM PF02706; match to protein family HMM TIGR03007.
  
  
 0.500
fliG
Flagellar motor switch protein FliG; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.
  
  
 0.498
Your Current Organism:
Cellvibrio japonicus
NCBI taxonomy Id: 498211
Other names: C. japonicus Ueda107, Cellvibrio japonicus Ueda107, Cellvibrio japonicus str. Ueda107, Cellvibrio japonicus strain Ueda107
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.