STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CJA_3417Polysaccharide biosynthesis family protein. (509 aa)    
Predicted Functional Partners:
lthA
Bacterial sugar transferase; Identified by match to protein family HMM PF02397; match to protein family HMM TIGR03013; match to protein family HMM TIGR03025.
 
  
 0.936
cpsA
Capsular polysaccharide biosynthesis protein; Identified by match to protein family HMM PF02397; match to protein family HMM TIGR03025.
 
  
 0.901
CJA_3419
TPR domain protein; Identified by match to protein family HMM PF00515.
 
   
 0.858
CJA_3434
UDP-glucose dehydrogenase; Identified by match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026.
  
  
 0.842
rfbB
dTDP-glucose 4,6-dehydratase; Identified by match to protein family HMM PF01370; match to protein family HMM TIGR01181; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.842
rfbC
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
  
  
 0.842
rfbA
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
  
  
 0.840
gt2L
Glycosyl transferase, putative, gt2L; Identified by match to protein family HMM PF00535.
 
  
 0.825
CJA_3418
Hypothetical protein; Identified by Glimmer3; putative.
  
    0.790
CJA_3415
Hypothetical protein; Identified by Glimmer3; putative.
       0.773
Your Current Organism:
Cellvibrio japonicus
NCBI taxonomy Id: 498211
Other names: C. japonicus Ueda107, Cellvibrio japonicus Ueda107, Cellvibrio japonicus str. Ueda107, Cellvibrio japonicus strain Ueda107
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.