STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CJA_3510Probable two-component sensor; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518. (471 aa)    
Predicted Functional Partners:
kdpE
DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.
 0.983
CJA_3511
Response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.
 
 0.968
CJA_3509
Hypothetical protein; Identified by Glimmer3; putative.
 
     0.895
CJA_3508
Putative membrane protein.
 
   
 0.872
CJA_0139
DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.
 
 0.851
baeR
DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.
 
 0.842
CJA_1406
Two-component response regulator CreB; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.
 
 0.838
abfR
abfR arabinofuranosidase two component system response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.
 
 0.832
phoP
DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.
 
 0.828
phoB
Phosphate regulon transcriptional regulatory protein PhoB; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486; match to protein family HMM TIGR02154.
 
 0.824
Your Current Organism:
Cellvibrio japonicus
NCBI taxonomy Id: 498211
Other names: C. japonicus Ueda107, Cellvibrio japonicus Ueda107, Cellvibrio japonicus str. Ueda107, Cellvibrio japonicus strain Ueda107
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.