STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CJA_3639ATP-dependent DNA helicase; Identified by match to protein family HMM PF04326. (486 aa)    
Predicted Functional Partners:
CJA_1578
Putative ATP-dependent DNA helicase; Identified by match to protein family HMM PF04326.
  
  
 
0.928
hsdS-1
Type I restriction system specificity protein; Identified by match to protein family HMM PF01420.
 
    0.918
recG
ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily.
     
  0.900
CJA_3640
Type I restriction-modification system specificity subunit; Identified by match to protein family HMM PF02384; match to protein family HMM PF02506; match to protein family HMM PF02809.
  
    0.832
CJA_3636
Hypothetical protein; Identified by Glimmer3; putative.
       0.746
CJA_3637
Hypothetical protein; Identified by Glimmer3; putative.
       0.746
CJA_1245
Fic family protein; Identified by match to protein family HMM PF02661.
 
     0.653
CJA_1577
Fic family protein; Adenylyltransferase that mediates the addition of adenosine 5'-monophosphate (AMP) to specific residues of target proteins.
 
     0.613
CJA_3632
HsdR; Subunit R is required for both nuclease and ATPase activities, but not for modification.
  
    0.596
CJA_3730
Conserved hypothetical protein.
  
    0.574
Your Current Organism:
Cellvibrio japonicus
NCBI taxonomy Id: 498211
Other names: C. japonicus Ueda107, Cellvibrio japonicus Ueda107, Cellvibrio japonicus str. Ueda107, Cellvibrio japonicus strain Ueda107
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.