STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CJA_3670Conserved hypothetical protein. (547 aa)    
Predicted Functional Partners:
CJA_3668
Conserved hypothetical protein.
 
 
 
 0.979
CJA_3677
GPW / gp25 family protein.
 
 
 0.976
CJA_3675
Rhs element Vgr protein; Identified by match to protein family HMM PF04524; match to protein family HMM PF05594; match to protein family HMM TIGR01646.
 
 
 0.960
CJA_3681
Hypothetical protein; Identified by Glimmer3; putative.
 
 
 
 0.960
CJA_3678
Hypothetical protein; Identified by Glimmer3; putative.
 
 
 0.949
CJA_3045
Hypothetical protein.
 
 
 0.941
CJA_3674
Conserved hypothetical protein; Identified by match to protein family HMM PF01476.
 
 
 0.938
CJA_3671
Conserved hypothetical phage tail region protein; Identified by match to protein family HMM TIGR02241.
 
 
 0.930
CJA_3672
Conserved hypothetical phage tail region protein; Identified by match to protein family HMM TIGR02241.
 
 
 0.927
CJA_3685
AAA superfamily ATPase; Identified by match to protein family HMM PF00004.
     0.889
Your Current Organism:
Cellvibrio japonicus
NCBI taxonomy Id: 498211
Other names: C. japonicus Ueda107, Cellvibrio japonicus Ueda107, Cellvibrio japonicus str. Ueda107, Cellvibrio japonicus strain Ueda107
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.