STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CJA_3693Trypsin domain/PDZ domain protein. (406 aa)    
Predicted Functional Partners:
mucD
MucD; Identified by match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037; Belongs to the peptidase S1C family.
  
  
 
0.919
CJA_0424
Trypsin domain protein; Identified by match to protein family HMM PF00089.
  
  
 
0.916
CJA_3694
Hypothetical protein; Identified by Glimmer3; putative.
       0.768
ompA
Identified by match to protein family HMM PF00691; match to protein family HMM PF01389; Belongs to the outer membrane OOP (TC 1.B.6) superfamily.
    
 
 0.738
CJA_0516
Hypothetical protein; At3g27925/K16N12.18; identified by match to protein family HMM PF00089; match to protein family HMM PF00595.
  
     0.629
CJA_3002
Oxidoreductase, zinc-binding dehydrogenase family; Identified by match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF02801.
  
 
 0.539
mucA
mucA; Identified by match to protein family HMM PF03872.
  
 
 0.530
CJA_3692
Putative membrane protein.
       0.499
CJA_3654
ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229.
  
  
 0.460
CJA_1644
Putative glycerol kinase; Identified by match to protein family HMM PF00370.
   
 0.438
Your Current Organism:
Cellvibrio japonicus
NCBI taxonomy Id: 498211
Other names: C. japonicus Ueda107, Cellvibrio japonicus Ueda107, Cellvibrio japonicus str. Ueda107, Cellvibrio japonicus strain Ueda107
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.