STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CJA_3722TonB-dependent ferric achromobactin receptor; Identified by match to protein family HMM PF00593. (702 aa)    
Predicted Functional Partners:
CJA_1308
TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM TIGR01783.
 
  
 0.647
CJA_0560
Outer membrane ferric siderophore receptor; Identified by match to protein family HMM PF00593; match to protein family HMM TIGR01783.
 
  
 0.618
CJA_1868
TonB-dependent receptor protein; Identified by match to protein family HMM PF00593; match to protein family HMM TIGR01783; match to protein family HMM TIGR03304.
 
  
 0.569
CJA_2292
TonB-dependent receptor protein; Identified by match to protein family HMM PF00593; match to protein family HMM PF07660; match to protein family HMM TIGR01783; match to protein family HMM TIGR03304.
 
  
 0.564
CJA_0475
Putative tonB2 protein; Identified by match to protein family HMM TIGR01352.
  
 
 0.553
CJA_1298
Ferripyoverdine receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF05594; match to protein family HMM TIGR01783.
 
  
 0.553
CJA_0913
TonB family C-terminal domain protein; Identified by match to protein family HMM TIGR01352.
  
 
 0.527
CJA_3723
Hypothetical protein; Identified by Glimmer3; putative.
       0.517
CJA_0982
TonB2; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
 
 0.503
CJA_3304
TonB-dependent receptor; Identified by match to protein family HMM PF00593.
  
  
 0.497
Your Current Organism:
Cellvibrio japonicus
NCBI taxonomy Id: 498211
Other names: C. japonicus Ueda107, Cellvibrio japonicus Ueda107, Cellvibrio japonicus str. Ueda107, Cellvibrio japonicus strain Ueda107
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.