STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tnsCTn7-Cj, transposition protein TnsC; This gene is encoded within a 20.5 kb Tn7-like transposable element. (539 aa)    
Predicted Functional Partners:
tnsB
Tn7-Cj, transposase protein TnsB; This gene is encoded within a 20.5 kb Tn7-like transposable element; identified by match to protein family HMM PF02178.
 
 0.989
tnsA
Tn7-Cj, transposase protein TnsA; This gene is encoded within a 20.5 kb Tn7-like transposable element.
 
 
 
 0.987
tnsD
Tn7-Cj, transposition protein TnsD; This gene is encoded within a 20.5 kb Tn7-like transposable element.
 
   
 0.951
tnsE
Tn7-Cj, transposition protein TnsE; This gene is encoded within a 20.5 kb Tn7-like transposable element.
     
 0.798
glmS
Glucosamine--fructose-6-phosphate aminotransferase, isomerizing; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
     
 0.547
CJA_3793
ISCja1, transposase orfA; This gene is encoded within a 20.5 kb Tn7-like transposable element; identified by match to protein family HMM PF01527.
 
     0.495
CJA_3796
Conserved hypothetical protein; This gene is encoded within a 20.5 kb Tn7-like transposable element.
       0.411
srlR
Putative transcriptional regulator, DeoR family; Identified by match to protein family HMM PF00455.
       0.409
Your Current Organism:
Cellvibrio japonicus
NCBI taxonomy Id: 498211
Other names: C. japonicus Ueda107, Cellvibrio japonicus Ueda107, Cellvibrio japonicus str. Ueda107, Cellvibrio japonicus strain Ueda107
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.