STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VDAG_05837FAD binding domain-containing protein; Belongs to the oxygen-dependent FAD-linked oxidoreductase family. (510 aa)    
Predicted Functional Partners:
VDAG_01385
Signal peptidase subunit 3.
    
 0.643
VDAG_06302
Microsomal signal peptidase 12kDa subunit.
   
 0.643
VDAG_03278
Uncharacterized protein.
   
 0.549
cyn1
Cyanate hydratase; Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide; Belongs to the cyanase family.
   
 0.549
VDAG_00693
Vacuolar membrane-associated protein iml-1.
    
 0.474
VDAG_06150
WD repeat-containing protein.
    
 0.444
VDAG_01871
WD repeat-containing protein.
    
 0.442
VDAG_00919
Tumor suppressor candidate 4.
    
 0.431
VDAG_10402
Isoamyl alcohol oxidase; Belongs to the oxygen-dependent FAD-linked oxidoreductase family.
  
     0.428
VDAG_07514
Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.
  
  
 0.419
Your Current Organism:
Verticillium dahliae
NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17
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