STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VDAG_07528HMA domain-containing protein. (85 aa)    
Predicted Functional Partners:
VDAG_00575
Cation-transporting ATPase pacS.
    
 0.908
VDAG_00981
Copper-transporting ATPase RAN1.
    
 0.908
VDAG_05491
Copper-transporting ATPase.
    
 0.908
VDAG_02630
Superoxide dismutase [Cu-Zn]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.
    
 0.734
VDAG_05694
Superoxide dismutase 1 copper chaperone.
    
 
 0.663
VDAG_01977
Cytochrome c oxidase assembly protein COX11.
      
 0.621
VDAG_01724
SCO2 protein.
   
  
 0.619
VDAG_04520
COX17 protein.
   
 
 0.604
VDAG_00414
Uncharacterized protein.
   
 
 0.600
VDAG_09026
NADH-ubiquinone oxidoreductase 29.9 kDa subunit.
   
 
 0.600
Your Current Organism:
Verticillium dahliae
NCBI taxonomy Id: 498257
Other names: V. dahliae VdLs.17, Verticillium dahliae VdLs.17
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