STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFA68830.1Isopentenyl-diphosphate delta-isomerase. (175 aa)    
Predicted Functional Partners:
SFB03121.1
Diphosphomevalonate decarboxylase.
 
 
 0.987
SFB09874.1
Geranylgeranyl diphosphate synthase, type II; Belongs to the FPP/GGPP synthase family.
  
 
 0.917
SFA71275.1
4-hydroxybenzoate polyprenyltransferase.
  
 
 0.908
SFB28525.1
Protein of unknown function.
  
 
 0.809
SFA68841.1
Small subunit ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.
    
  0.761
SFA73373.1
Phytoene/squalene synthetase.
 
 
 0.757
SFB03185.1
4-hydroxybenzoate polyprenyltransferase.
  
 
 0.716
SFA68824.1
6-pyruvoyltetrahydropterin/6- carboxytetrahydropterin synthase.
       0.678
SFA78450.1
Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
  
 
 0.677
SFA68813.1
Peroxiredoxin Q/BCP.
       0.656
Your Current Organism:
Flavobacterium swingsii
NCBI taxonomy Id: 498292
Other names: CIP 109868, DSM 21789, F. swingsii, Flavobacterium sp. WB2.3-68, Flavobacterium swingsii Ali et al. 2009, WB 2.3-68, strain WB2.3-68
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