STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFA78434.1Hypothetical protein. (227 aa)    
Predicted Functional Partners:
SFA78492.1
Periplasmic chaperone for outer membrane proteins Skp.
 
 
   0.877
SFA78467.1
Beta-barrel assembly machine subunit BamA.
 
 
   0.858
SFA78450.1
Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
  
    0.825
SFA78400.1
Hypothetical protein.
 
     0.780
SFA78513.1
Periplasmic chaperone for outer membrane proteins Skp.
   
   0.776
SFA97533.1
Protein involved in gliding motility SprE.
  
     0.752
SFB01080.1
Putative DNA-binding domain-containing protein.
  
    0.723
SFB10643.1
WD40-like Beta Propeller Repeat.
  
 
 0.714
SFB28589.1
Family of unknown function.
  
     0.689
SFA78583.1
Type IX secretion system membrane protein, PorP/SprF family.
  
     0.687
Your Current Organism:
Flavobacterium swingsii
NCBI taxonomy Id: 498292
Other names: CIP 109868, DSM 21789, F. swingsii, Flavobacterium sp. WB2.3-68, Flavobacterium swingsii Ali et al. 2009, WB 2.3-68, strain WB2.3-68
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.