STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFA85533.1Hypothetical protein. (130 aa)    
Predicted Functional Partners:
pyrE
Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).
    
  0.913
SFA72159.1
Hypothetical protein.
  
     0.767
SFB22874.1
Hypothetical protein.
  
     0.742
SFB22276.1
Hypothetical protein.
  
     0.718
SFB00552.1
Hypothetical protein.
  
     0.713
SFA93146.1
Protein of unknown function.
  
     0.707
SFB03159.1
Mevalonate kinase.
  
     0.703
SFB08649.1
GldM C-terminal domain-containing protein.
  
     0.698
SFA85602.1
Hypothetical protein.
  
     0.684
SFA75204.1
Putative porin.
 
     0.676
Your Current Organism:
Flavobacterium swingsii
NCBI taxonomy Id: 498292
Other names: CIP 109868, DSM 21789, F. swingsii, Flavobacterium sp. WB2.3-68, Flavobacterium swingsii Ali et al. 2009, WB 2.3-68, strain WB2.3-68
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.