Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFA76505.1 | SFA86804.1 | SAMN05660845_0434 | SAMN05660845_0716 | Arginase family enzyme; Belongs to the arginase family. | Alanine dehydrogenase. | 0.506 |
SFA76505.1 | SFB10413.1 | SAMN05660845_0434 | SAMN05660845_1626 | Arginase family enzyme; Belongs to the arginase family. | Saccharopine dehydrogenase, NADP-dependent. | 0.598 |
SFA76505.1 | lysA | SAMN05660845_0434 | SAMN05660845_0085 | Arginase family enzyme; Belongs to the arginase family. | Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. | 0.518 |
SFA86783.1 | SFA86804.1 | SAMN05660845_0715 | SAMN05660845_0716 | CubicO group peptidase, beta-lactamase class C family. | Alanine dehydrogenase. | 0.518 |
SFA86804.1 | SFA76505.1 | SAMN05660845_0716 | SAMN05660845_0434 | Alanine dehydrogenase. | Arginase family enzyme; Belongs to the arginase family. | 0.506 |
SFA86804.1 | SFA86783.1 | SAMN05660845_0716 | SAMN05660845_0715 | Alanine dehydrogenase. | CubicO group peptidase, beta-lactamase class C family. | 0.518 |
SFA86804.1 | SFA86827.1 | SAMN05660845_0716 | SAMN05660845_0717 | Alanine dehydrogenase. | Peptidase family M28. | 0.568 |
SFA86804.1 | SFA93325.1 | SAMN05660845_0716 | SAMN05660845_1056 | Alanine dehydrogenase. | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | 0.886 |
SFA86804.1 | SFB10413.1 | SAMN05660845_0716 | SAMN05660845_1626 | Alanine dehydrogenase. | Saccharopine dehydrogenase, NADP-dependent. | 0.983 |
SFA86804.1 | SFB27066.1 | SAMN05660845_0716 | SAMN05660845_2317 | Alanine dehydrogenase. | Type IX secretion system membrane protein, PorP/SprF family. | 0.428 |
SFA86804.1 | lysA | SAMN05660845_0716 | SAMN05660845_0085 | Alanine dehydrogenase. | Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. | 0.818 |
SFA86804.1 | nadK | SAMN05660845_0716 | SAMN05660845_0524 | Alanine dehydrogenase. | NAD+ kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP. | 0.516 |
SFA86827.1 | SFA86804.1 | SAMN05660845_0717 | SAMN05660845_0716 | Peptidase family M28. | Alanine dehydrogenase. | 0.568 |
SFA93325.1 | SFA86804.1 | SAMN05660845_1056 | SAMN05660845_0716 | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | Alanine dehydrogenase. | 0.886 |
SFA93325.1 | lysA | SAMN05660845_1056 | SAMN05660845_0085 | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. | 0.613 |
SFB10413.1 | SFA76505.1 | SAMN05660845_1626 | SAMN05660845_0434 | Saccharopine dehydrogenase, NADP-dependent. | Arginase family enzyme; Belongs to the arginase family. | 0.598 |
SFB10413.1 | SFA86804.1 | SAMN05660845_1626 | SAMN05660845_0716 | Saccharopine dehydrogenase, NADP-dependent. | Alanine dehydrogenase. | 0.983 |
SFB10413.1 | lysA | SAMN05660845_1626 | SAMN05660845_0085 | Saccharopine dehydrogenase, NADP-dependent. | Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. | 0.730 |
SFB27066.1 | SFA86804.1 | SAMN05660845_2317 | SAMN05660845_0716 | Type IX secretion system membrane protein, PorP/SprF family. | Alanine dehydrogenase. | 0.428 |
lysA | SFA76505.1 | SAMN05660845_0085 | SAMN05660845_0434 | Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. | Arginase family enzyme; Belongs to the arginase family. | 0.518 |
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