STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFA90333.1Two-component system, OmpR family, sensor histidine kinase KdpD. (370 aa)    
Predicted Functional Partners:
SFA90363.1
Two-component system, OmpR family, KDP operon response regulator KdpE.
 
  0.995
SFA91508.1
PAS domain S-box-containing protein.
0.941
SFA92348.1
PAS domain S-box-containing protein.
0.939
SFA92907.1
PAS domain S-box-containing protein; Manually curated.
0.937
SFB09965.1
PAS domain S-box-containing protein.
  
 0.926
SFA70971.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
  
  0.876
SFB30006.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
  
  0.873
SFB13237.1
Two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP.
  
  0.851
SFB15417.1
Signal transduction histidine kinase.
 
0.842
SFA89471.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 
  0.837
Your Current Organism:
Flavobacterium swingsii
NCBI taxonomy Id: 498292
Other names: CIP 109868, DSM 21789, F. swingsii, Flavobacterium sp. WB2.3-68, Flavobacterium swingsii Ali et al. 2009, WB 2.3-68, strain WB2.3-68
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.