STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFB12072.1uroporphyrinogen-III synthase. (249 aa)    
Predicted Functional Partners:
hemC
Hydroxymethylbilane synthase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
  
 0.974
SFB03791.1
uroporphyrin-III C-methyltransferase; Belongs to the precorrin methyltransferase family.
  
 
 0.916
hemE
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
  
 
 0.915
SFA98305.1
Porphobilinogen synthase; Belongs to the ALAD family.
  
 0.853
SFB12058.1
Protein of unknown function.
       0.770
SFA69371.1
Hypothetical protein.
  
     0.756
SFB22255.1
Protein of unknown function.
  
     0.754
SFB10284.1
Uncharacterized metal-binding protein YceD, DUF177 family.
  
     0.744
SFB03846.1
Hypothetical protein.
  
 
 0.728
SFA74984.1
Putative sigma-54 modulation protein.
  
     0.714
Your Current Organism:
Flavobacterium swingsii
NCBI taxonomy Id: 498292
Other names: CIP 109868, DSM 21789, F. swingsii, Flavobacterium sp. WB2.3-68, Flavobacterium swingsii Ali et al. 2009, WB 2.3-68, strain WB2.3-68
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