STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFB20988.1Lipopolysaccharide transport system permease protein. (319 aa)    
Predicted Functional Partners:
SFB21003.1
Lipopolysaccharide transport system ATP-binding protein.
 
 0.999
SFB20495.1
Polysaccharide export outer membrane protein.
 
 
 0.895
SFB20944.1
Polysaccharide export outer membrane protein.
  
 
 0.844
SFB21018.1
Glycosyl transferases group 1.
  
    0.795
SFB21090.1
Glycosyl transferase family 2.
 
    0.678
SFB21061.1
Glycosyltransferase involved in cell wall bisynthesis.
 
    0.674
SFB21045.1
Glycosyltransferase involved in cell wall bisynthesis.
 
    0.658
SFB01655.1
ABC-2 type transport system permease protein.
    
  0.643
SFB21031.1
Methyltransferase, FkbM family.
       0.615
SFB21121.1
N-acylneuraminate cytidylyltransferase.
     
 0.591
Your Current Organism:
Flavobacterium swingsii
NCBI taxonomy Id: 498292
Other names: CIP 109868, DSM 21789, F. swingsii, Flavobacterium sp. WB2.3-68, Flavobacterium swingsii Ali et al. 2009, WB 2.3-68, strain WB2.3-68
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.