STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFB26928.1Hypothetical protein. (151 aa)    
Predicted Functional Partners:
SFB26948.1
Hypothetical protein.
  
    0.827
SFB26964.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
     0.773
SFA76669.1
Lipopolysaccharide-assembly.
  
     0.532
SFB11042.1
LPS export ABC transporter protein LptC.
  
     0.498
SFA70897.1
Hypothetical protein.
  
     0.484
SFB09086.1
Periplasmic chaperone for outer membrane proteins Skp.
  
     0.463
SFA87348.1
TonB dependent receptor.
  
     0.422
SFB00839.1
Hypothetical protein.
  
     0.415
SFA92265.1
Outer membrane lipoprotein-sorting protein; Manually curated.
  
     0.413
SFA78400.1
Hypothetical protein.
  
     0.406
Your Current Organism:
Flavobacterium swingsii
NCBI taxonomy Id: 498292
Other names: CIP 109868, DSM 21789, F. swingsii, Flavobacterium sp. WB2.3-68, Flavobacterium swingsii Ali et al. 2009, WB 2.3-68, strain WB2.3-68
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.