STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFB29577.1Isopenicillin N synthase; Belongs to the iron/ascorbate-dependent oxidoreductase family. (316 aa)    
Predicted Functional Partners:
SFB29601.1
Translation initiation factor 1.
       0.535
SFB29556.1
2-oxoisovalerate dehydrogenase E1 component.
       0.522
SFB29591.1
GxxExxY protein.
  
    0.494
SFB29636.1
Uridine phosphorylase.
       0.457
SFB29707.1
ABC-type nitrate/sulfonate/bicarbonate transport system, substrate-binding protein.
 
     0.434
SFB11989.1
Nucleoside-diphosphate-sugar epimerase.
  
  0.412
Your Current Organism:
Flavobacterium swingsii
NCBI taxonomy Id: 498292
Other names: CIP 109868, DSM 21789, F. swingsii, Flavobacterium sp. WB2.3-68, Flavobacterium swingsii Ali et al. 2009, WB 2.3-68, strain WB2.3-68
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.