Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EEF84152.1 | EEF84235.1 | BSPA14S_0118 | BSPA14S_0922 | Identified by match to protein family HMM PF03006; match to protein family HMM TIGR01065. | Identified by match to protein family HMM PF02540; match to protein family HMM TIGR00552; Belongs to the NAD synthetase family. | 0.535 |
| EEF84152.1 | EEF84479.1 | BSPA14S_0118 | BSPA14S_0737 | Identified by match to protein family HMM PF03006; match to protein family HMM TIGR01065. | Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM TIGR03423. | 0.848 |
| EEF84152.1 | EEF84655.1 | BSPA14S_0118 | BSPA14S_0304 | Identified by match to protein family HMM PF03006; match to protein family HMM TIGR01065. | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein. | 0.681 |
| EEF84152.1 | EEF84798.1 | BSPA14S_0118 | BSPA14S_0165 | Identified by match to protein family HMM PF03006; match to protein family HMM TIGR01065. | Outer membrane protein; Identified by match to protein family HMM PF00691. | 0.847 |
| EEF84152.1 | EEF84899.1 | BSPA14S_0118 | BSPA14S_0842 | Identified by match to protein family HMM PF03006; match to protein family HMM TIGR01065. | Putative liporotein. | 0.848 |
| EEF84152.1 | alr | BSPA14S_0118 | BSPA14S_0159 | Identified by match to protein family HMM PF03006; match to protein family HMM TIGR01065. | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | 0.848 |
| EEF84235.1 | EEF84152.1 | BSPA14S_0922 | BSPA14S_0118 | Identified by match to protein family HMM PF02540; match to protein family HMM TIGR00552; Belongs to the NAD synthetase family. | Identified by match to protein family HMM PF03006; match to protein family HMM TIGR01065. | 0.535 |
| EEF84235.1 | EEF84479.1 | BSPA14S_0922 | BSPA14S_0737 | Identified by match to protein family HMM PF02540; match to protein family HMM TIGR00552; Belongs to the NAD synthetase family. | Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM TIGR03423. | 0.533 |
| EEF84235.1 | EEF84554.1 | BSPA14S_0922 | BSPA14S_0758 | Identified by match to protein family HMM PF02540; match to protein family HMM TIGR00552; Belongs to the NAD synthetase family. | Conserved hypothetical protein; Identified by match to protein family HMM PF05430. | 0.930 |
| EEF84235.1 | EEF84655.1 | BSPA14S_0922 | BSPA14S_0304 | Identified by match to protein family HMM PF02540; match to protein family HMM TIGR00552; Belongs to the NAD synthetase family. | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein. | 0.672 |
| EEF84235.1 | alr | BSPA14S_0922 | BSPA14S_0159 | Identified by match to protein family HMM PF02540; match to protein family HMM TIGR00552; Belongs to the NAD synthetase family. | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | 0.876 |
| EEF84235.1 | ddl | BSPA14S_0922 | BSPA14S_0196 | Identified by match to protein family HMM PF02540; match to protein family HMM TIGR00552; Belongs to the NAD synthetase family. | D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family. | 0.665 |
| EEF84235.1 | murE | BSPA14S_0922 | BSPA14S_0198 | Identified by match to protein family HMM PF02540; match to protein family HMM TIGR00552; Belongs to the NAD synthetase family. | UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of an amino acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. | 0.554 |
| EEF84479.1 | EEF84152.1 | BSPA14S_0737 | BSPA14S_0118 | Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM TIGR03423. | Identified by match to protein family HMM PF03006; match to protein family HMM TIGR01065. | 0.848 |
| EEF84479.1 | EEF84235.1 | BSPA14S_0737 | BSPA14S_0922 | Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM TIGR03423. | Identified by match to protein family HMM PF02540; match to protein family HMM TIGR00552; Belongs to the NAD synthetase family. | 0.533 |
| EEF84479.1 | EEF84655.1 | BSPA14S_0737 | BSPA14S_0304 | Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM TIGR03423. | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein. | 0.815 |
| EEF84479.1 | EEF84798.1 | BSPA14S_0737 | BSPA14S_0165 | Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM TIGR03423. | Outer membrane protein; Identified by match to protein family HMM PF00691. | 0.847 |
| EEF84479.1 | EEF84899.1 | BSPA14S_0737 | BSPA14S_0842 | Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM TIGR03423. | Putative liporotein. | 0.848 |
| EEF84479.1 | alr | BSPA14S_0737 | BSPA14S_0159 | Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM TIGR03423. | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | 0.880 |
| EEF84479.1 | ddl | BSPA14S_0737 | BSPA14S_0196 | Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM TIGR03423. | D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family. | 0.506 |
page 1 of 4
