node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
HM1_0645 | HM1_0646 | HM1_0645 | HM1_0646 | Conserved hypothetical protein; Member of shikimate / quinate 5-dehydrogenase PFAM, PF01488. | Conserved hypothetical protein. | 0.995 |
HM1_0645 | HM1_3153 | HM1_0645 | HM1_3153 | Conserved hypothetical protein; Member of shikimate / quinate 5-dehydrogenase PFAM, PF01488. | lysyl-tRNA synthetase. | 0.498 |
HM1_0645 | greA | HM1_0645 | HM1_0644 | Conserved hypothetical protein; Member of shikimate / quinate 5-dehydrogenase PFAM, PF01488. | Transcription elongation factor grea; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. | 0.605 |
HM1_0646 | HM1_0645 | HM1_0646 | HM1_0645 | Conserved hypothetical protein. | Conserved hypothetical protein; Member of shikimate / quinate 5-dehydrogenase PFAM, PF01488. | 0.995 |
HM1_0646 | HM1_3153 | HM1_0646 | HM1_3153 | Conserved hypothetical protein. | lysyl-tRNA synthetase. | 0.501 |
HM1_0646 | greA | HM1_0646 | HM1_0644 | Conserved hypothetical protein. | Transcription elongation factor grea; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. | 0.605 |
HM1_3153 | HM1_0645 | HM1_3153 | HM1_0645 | lysyl-tRNA synthetase. | Conserved hypothetical protein; Member of shikimate / quinate 5-dehydrogenase PFAM, PF01488. | 0.498 |
HM1_3153 | HM1_0646 | HM1_3153 | HM1_0646 | lysyl-tRNA synthetase. | Conserved hypothetical protein. | 0.501 |
HM1_3153 | greA | HM1_3153 | HM1_0644 | lysyl-tRNA synthetase. | Transcription elongation factor grea; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. | 0.632 |
HM1_3153 | rpoA | HM1_3153 | HM1_1407 | lysyl-tRNA synthetase. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.474 |
HM1_3153 | rpoB | HM1_3153 | HM1_1370 | lysyl-tRNA synthetase. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.530 |
HM1_3153 | rpoC | HM1_3153 | HM1_1371 | lysyl-tRNA synthetase. | DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.445 |
HM1_3153 | rpsD | HM1_3153 | HM1_1406 | lysyl-tRNA synthetase. | 30S ribosomal protein s4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.655 |
greA | HM1_0645 | HM1_0644 | HM1_0645 | Transcription elongation factor grea; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. | Conserved hypothetical protein; Member of shikimate / quinate 5-dehydrogenase PFAM, PF01488. | 0.605 |
greA | HM1_0646 | HM1_0644 | HM1_0646 | Transcription elongation factor grea; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. | Conserved hypothetical protein. | 0.605 |
greA | HM1_3153 | HM1_0644 | HM1_3153 | Transcription elongation factor grea; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. | lysyl-tRNA synthetase. | 0.632 |
greA | pnp-2 | HM1_0644 | HM1_2322 | Transcription elongation factor grea; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.630 |
greA | rpoA | HM1_0644 | HM1_1407 | Transcription elongation factor grea; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.929 |
greA | rpoB | HM1_0644 | HM1_1370 | Transcription elongation factor grea; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.939 |
greA | rpoC | HM1_0644 | HM1_1371 | Transcription elongation factor grea; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. | DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.971 |