STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HM1_0646Conserved hypothetical protein. (326 aa)    
Predicted Functional Partners:
HM1_0645
Conserved hypothetical protein; Member of shikimate / quinate 5-dehydrogenase PFAM, PF01488.
     0.995
HM1_0736
Conserved hypothetical protein.
  
     0.775
HM1_1942
Streptomyces cyclase/dehydrase, putative.
  
     0.708
HM1_2268
Glycosyltransferase involved in cell wall biogenesis, putative; Member of glycosyl transferase, group 2 family protein, PF00535.
  
     0.676
HM1_2428
Conserved hypothetical protein; Similar to membrane protein.
  
     0.640
greA
Transcription elongation factor grea; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.
       0.605
HM1_2100
Conserved hypothetical protein.
  
     0.573
spoIIIAH
Stage iii sporulation protein ah domain protein, putative.
  
     0.550
HM1_1274
Conserved hypothetical protein, putative membrane protein.
  
     0.550
yqeG
Had superfamily (subfamily iiia) phosphatase.
  
     0.523
Your Current Organism:
Heliobacterium modesticaldum
NCBI taxonomy Id: 498761
Other names: H. modesticaldum Ice1, Heliobacterium modesticaldum Ice1, Heliobacterium modesticaldum str. Ice1, Heliobacterium modesticaldum strain Ice1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.