STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spoVBStage v sporulation protein b; Member of polysaccharide biosynthesis protein domain, PF01943, and COG2244, membrane protein involved in the export of O-antigen and teichoic acid. (568 aa)    
Predicted Functional Partners:
HM1_0531
Conserved hypothetical protein; Belongs to the UPF0297 family.
  
     0.737
HM1_0717
Mazg family protein.
  
    0.706
spoVT-2
Stage v sporulation protein t, abrb family transcriptional regulator.
     
 0.666
rpoE-3
RNA polymerase sigma-70 factor.
  
    0.659
HM1_1997
Conserved hypothetical protein.
  
     0.627
HM1_0966
Conserved domain protein.
  
     0.613
polC
DNA polymerase iii, alpha subunit, gram-positive type; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
  
    0.597
HM1_2181
Conserved hypothetical protein, putative helix-turn-helix protein, ylxm / p13 like protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein.
  
     0.583
HM1_0714
Conserved hypothetical protein.
  
  
 0.536
HM1_0981
Hypothetical protein.
  
     0.520
Your Current Organism:
Heliobacterium modesticaldum
NCBI taxonomy Id: 498761
Other names: H. modesticaldum Ice1, Heliobacterium modesticaldum Ice1, Heliobacterium modesticaldum str. Ice1, Heliobacterium modesticaldum strain Ice1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.