STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cotSPutative spore coat protein s, putative. (421 aa)    
Predicted Functional Partners:
HM1_0339
Glycosyltransferase, group 1 family protein, putative.
 
  
 0.642
HM1_2423
DNA internalization-related competence protein comec/rec2.
       0.580
holA
DNA polymerase iii, delta subunit, putative.
       0.544
HM1_3060
Lysm domain protein, putative.
 
   
 0.536
HM1_1767
Hypothetical protein.
  
     0.469
HM1_0523
Transposase.
  
     0.430
HM1_1560
Transposase.
  
     0.428
HM1_0019
Transposase.
  
     0.426
spoIIIAA
Stage iii sporulation protein aa.
  
  
 0.426
HM1_0155
Transposase.
  
     0.423
Your Current Organism:
Heliobacterium modesticaldum
NCBI taxonomy Id: 498761
Other names: H. modesticaldum Ice1, Heliobacterium modesticaldum Ice1, Heliobacterium modesticaldum str. Ice1, Heliobacterium modesticaldum strain Ice1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.