STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sleBSpore cortex-lytic enzyme prepeptide; Member of cell wall hydrolase PFAM, PF07486. (183 aa)    
Predicted Functional Partners:
HM1_2513
Conserved domain protein.
 
  
 0.945
HM1_1891
Conserved hypothetical protein.
  
  
 0.633
gerAC
Spore germination protein b3, gerac, putative; Also similar to gerKC.
 
  
 0.604
HM1_0477
Member of spore germination B3/ GerAC like, C-terminal, PF05504.
  
    0.596
spoVAD
Stage v sporulation protein ad.
  
  
 0.594
spoVAC
Stage v sporulation protein ac.
  
  
 0.563
gerKA
Spore germination protein ka.
  
   
 0.529
spoIIGA
Sporulation sigma-e factor-processing peptidase; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family.
  
   
 0.523
gpr
Spore protease; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
    0.517
spoVAE-2
Stage v sporulation protein ae, putative.
  
  
 0.516
Your Current Organism:
Heliobacterium modesticaldum
NCBI taxonomy Id: 498761
Other names: H. modesticaldum Ice1, Heliobacterium modesticaldum Ice1, Heliobacterium modesticaldum str. Ice1, Heliobacterium modesticaldum strain Ice1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.