STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HM1_2613Ferredoxin (4fe-4s) domain, putative iron-only hydrogenase. (484 aa)    
Predicted Functional Partners:
HM1_1028
NADH dehydrogenase conserved domain protein, nuoe and nuof.
 
 
 0.980
nuoF
Proton-translocating NADH-ubiquinone oxidoreductase, chain f.
 
 
 0.977
HM1_2651
Uncharacterized protein ygfk; May contain a pyridine nucleotide-disulfide oxidoreductase domain and a 4Fe-4S binding domain.
  
 
 0.732
HM1_0807
Pyruvate:ferredoxin (flavodoxin) oxidoreductase; Contains alpha, beta and gamma subunits of 2-oxoacid:ferredoxin oxidoreductase, a gene related to pyruvate:ferredoxin (flavodoxin) oxidoreductase. These genes have the gene symbols porA, porB, porG and napF.
 
  
 0.722
nuoG
Proton-translocating NADH-ubiquinone oxidoreductase 75 kd, chain g.
 
 
 
0.692
nuoE
Proton-translocating NADH-ubiquinone oxidoreductase, chain e.
 
 0.692
HM1_0890
4fe-4S ferredoxin, iron-sulfur binding domain protein.
  
  
 0.609
fdhA
Formate dehydrogenase, alpha subunit.
   
 
 0.523
fdhA-2
Formate dehydrogenase, alpha subunit.
   
 
 0.523
fdxB
Ferredoxin iii, nif-specific, putative.
  
 
 0.511
Your Current Organism:
Heliobacterium modesticaldum
NCBI taxonomy Id: 498761
Other names: H. modesticaldum Ice1, Heliobacterium modesticaldum Ice1, Heliobacterium modesticaldum str. Ice1, Heliobacterium modesticaldum strain Ice1
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