STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HM1_2715Peptidase family m50. (293 aa)    
Predicted Functional Partners:
HM1_2716
Peptidase m23b, putative.
       0.787
cafA
Ribonuclease, rne/rng family.
       0.593
HM1_2713
Radical sam protein, putative; Member of COG5011, uncharacterized protein conserved in bacteria.
       0.593
HM1_2714
Radical sam protein, putative; Member of COG1032 Fe-S oxidoreductase.
       0.593
HM1_2717
Hypothetical protein.
       0.530
rplU
50S ribosomal protein l21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
       0.484
spoIIID
Stage iii sporulation protein d.
   
  
 0.480
rpmA
50S ribosomal protein l27; Belongs to the bacterial ribosomal protein bL27 family.
       0.477
HM1_2710
Ribosomal protein, putative.
       0.477
spoIVB
Stage iv sporulation protein b.
  
   
 0.454
Your Current Organism:
Heliobacterium modesticaldum
NCBI taxonomy Id: 498761
Other names: H. modesticaldum Ice1, Heliobacterium modesticaldum Ice1, Heliobacterium modesticaldum str. Ice1, Heliobacterium modesticaldum strain Ice1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.