STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HM1_2778Peptidoglycan-binding domain protein, putative. (389 aa)    
Predicted Functional Partners:
spoVD
Stage v sporulation protein d; Also matches penicillin binding protein transpeptidase domain, PF00905, and penicillin-binding protein dimerisation domain PFAM, PF03717.
  
 
 0.625
murF
Udp-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate--d-alanyl-d-alanyl ligase.
  
  
 0.622
HM1_2867
N-acetylmuramoyl-l-alanine amidase precursor, putative; Member of LysM domain, PF01476.
  
  
 0.612
ftsX
Cell division protein ftsx, putative; Part of the ABC transporter FtsEX involved in asymmetric cellular division facilitating the initiation of sporulation. Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
     
 0.520
HM1_0294
Hypothetical protein.
 
   
 0.490
HM1_2780
Conserved hypothetical protein.
     
 0.483
HM1_2779
Glucose-methanol-choline oxidoreductase, putative.
       0.479
HM1_2781
Conserved hypothetical protein.
       0.470
HM1_2138
Serine/threonine protein kinase, putative.
  
  
 0.442
HM1_1425
Ammecr1-like protein.
 
     0.437
Your Current Organism:
Heliobacterium modesticaldum
NCBI taxonomy Id: 498761
Other names: H. modesticaldum Ice1, Heliobacterium modesticaldum Ice1, Heliobacterium modesticaldum str. Ice1, Heliobacterium modesticaldum strain Ice1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.