STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HM1_3003Type iii restriction enzyme, res subunit. (1022 aa)    
Predicted Functional Partners:
HM1_3004
DNA methylase.
 
  
 0.972
HM1_3006
Snf2 family RNA helicase.
 
    0.945
HM1_2925
DNA methylase, putative.
 
  
 0.847
HM1_3005
Hypothetical protein.
       0.804
HM1_2890
DNA methylase, family protein; Belongs to the N(4)/N(6)-methyltransferase family.
     
 0.443
HM1_2891
DNA methylase; Belongs to the N(4)/N(6)-methyltransferase family.
     
 0.443
HM1_2946
DNA methylase.
     
 0.443
cbiM-2
Cobalamin biosynthesis protein cbim.
       0.443
Your Current Organism:
Heliobacterium modesticaldum
NCBI taxonomy Id: 498761
Other names: H. modesticaldum Ice1, Heliobacterium modesticaldum Ice1, Heliobacterium modesticaldum str. Ice1, Heliobacterium modesticaldum strain Ice1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.