STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HM1_3060Lysm domain protein, putative. (505 aa)    
Predicted Functional Partners:
gerKB
Spore germination protein kb, putative.
  
     0.685
HM1_0478
Spore germination protein, putative.
  
     0.670
HM1_0332
Hypothetical protein.
 
   
 0.638
gerAC
Spore germination protein b3, gerac, putative; Also similar to gerKC.
  
     0.568
HM1_0338
Hypothetical protein.
 
   
 0.549
cotS
Putative spore coat protein s, putative.
 
   
 0.536
gerKC
Spore germination protein kc/spore germination b3 gerac, putative; Also known as gerAC.
  
     0.531
HM1_0331
Hypothetical protein.
 
   
 0.509
HM1_2491
Erfk/ybis/ycfs/ynhg; Domain similar to spore protein ykuD.
 
   
 0.440
HM1_1425
Ammecr1-like protein.
 
     0.433
Your Current Organism:
Heliobacterium modesticaldum
NCBI taxonomy Id: 498761
Other names: H. modesticaldum Ice1, Heliobacterium modesticaldum Ice1, Heliobacterium modesticaldum str. Ice1, Heliobacterium modesticaldum strain Ice1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.